In the Bernstein et al. paper about EdDSA, the authors claim EdDSA is resilient against collisions (i.e. it can still be secure even if the hash function used isn't collision-resistant), drawing on a result from Neven et al. that says that Schnorr signatures are secure when used with a hash function that is random-prefix preimage resistant and random-prefix second-preimage resistant. Bernstein says that
Neven, Smart, and Warinschi in [60] proposed taking advantage of collision resilience by choosing $H$ to output only $b/2$ bits, reducing the size of compressed signatures by 25%
and then makes the following claim:
Our verification equation is the same as Schnorr's verification equation with double-size hashing instead of half-size hashing, with $\underline{A}$ inserted as an extra hash input, and without Schnorr's compression of $\underline{R}$. These modifications obviously do not compromise security.
However: In Neven, one mention of halving the hash length occurs at page 8, where they note that the herding attack from Kelsey and Kohno allows one to use a lack of collision-resistance for a Merkle–Damgård hash functions to break the random-prefix preimage and second-preimage resistance requirements, and so recommend not using a Merkle–Damgård hash function as-is, and instead truncating it. They present this not as a convenience thing, but a security thing (so that even if collision-resistance is compromised, the two properties needed for Schnorr signatures to be secure aren't necessarily compromised by the herding attack). SHA-512, of course, is a Merkle–Damgård hash function.
Here's my question: I'm pretty sure I didn't catch something the authors of the EdDSA paper somehow missed. There's probably something I'm missing here. What is it?