This question is about the approximate GCD problem which is defined as follows: Given any number of the approximate multiples $a_i = p \cdot q_i + r_i$ of $p$, where $p$, $q_i$ and $r_i$ are integers, the problem is to find the hidden common divisor $p$. Note that $q_i$ and $r_i$ change in each $a_i$.
I've recently read “Practical Fully Homomorphic Encryption without Noise Reduction” by Liu, about a fast symmetric FHE scheme, which is based on the approximate GCD problem. Now the paper claims that it reaches 128-bit security by increasing the linear search space's size to $>2^{128}$.
Is there any attack on the approximate GCD problem, that is faster than brute-force (trying out all possible approximate GCDs)?
As an example set of (brute-force secure?) parameters, I'd say that $\log_2q_i\approx64\approx\log_2r_i$ and $\log_2p\approx 128$ should be secure against brute force as one would need $2^{128}$ tries for retrieving $p$ or would have to try more than $2^{64}*2^{64}=2^{128}$ values for $q_i$ and $r_i$.