I'm a little confused because I thought all 3 keys had to be independent for it to be backward-compatible with DES, unless by backward-compatible they were referring to something else?
No, all three keys have to be identical for the EDE (encrypt-decrypt-encrypt) scheme to be backwards compatible with DES. This is called single key triple DES.
What they may be referring to is the DES weak keys. There are keys $k_1$ and $k_2$ for DES where $E_{k_1}(E_{k_2}(X)) = X$. So if you'd use triple encryption $E_{k_1}(E_{k_2}(E_{k_1}(X)))$ then you would get $E_{k_1}(X)$ if you'd use weak keys.
Alternatively, they may just mean that you currently have to use triple-DES and that you achieve backwards compatibility in case $k_1 = k_2$.