The reference for DES is FIPS 46-3. See page 10 for the permutations.
Write $\texttt{0x0002 0000 0000 0001}$ in binary. Start with $\texttt{0x0002}$:
0: 0000 (bits 1-4)
0: 0000 (bits 5-8)
0: 0000 (bits 9-12)
2: 0010 <--bit 15 is 1 (bits 13-16)
Bits 17-48 are all 0
. Now look at $\texttt{0x0001}$:
0: 0000 (bits 49-52)
0: 0000 (bits 53-56)
0: 0000 (bits 57-60)
1: 0001 <--bit 64 is 1 (bits 61-64)
Thus, bits 15 and 64 are set.
At this link, you can see the initial permutation and final permutation. It looks like the answer you're referring to is actually talking about the final permutation, so to match what you have, I'll be using that. Looking at the final permutation, the number "63" is the 15th bit, and the number "25" is the 64th bit. So your result is, in binary,
$\texttt{0000 0000 0000 0000 0000 0000 1000 0000}$ (bits 1-32, bit 25 set)
$\texttt{0000 0000 0000 0000 0000 0000 0000 0010}$ (bits 33-64, bit 63 set)
Or, in hexadecimal,
$\texttt{0x0000 0080 0000 0002}$.
This is the final permutation, not the initial one.