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The initial and final permutation have no influence on security (they are unkeyed and can be undone by anybody). The usual explanation is that they make implementation easier in some contexts, namely a hardware circuit which receives data over a 8-bit bus: it can accumulate the bits into eight shift registers, which is more efficient (in terms of circuit area) than a single 64-bit register. This process "naturally" performs the initial permutation of DES.