Q1: Why are these tests stroked out?
These tests are stroked out on pages 57-58 of the current FIPS 140-2 because they are no longer part of the current FIPS 140-2 standard, since Change Notice 2 of 2002 December third, where these pages belong.
My guess for the rationale of removing these tests is that
- It was realized that the very principle of using theses RNG tests and bounds was unsound:
- When testing a Cryptographically Secure Pseudo-RNG, a " cryptographic algorithm test using a known answer " (of 4.9.1) is good enough, and a statistical test on the output of a PRNG only a nuisance: the only errors it can report are false positives (else the very definition of the CSPRNG would be broken, when the intend is to test the implementation)!
- When testing a True RNG, fact is that it is very hard to make a physical TRNG source that pass these tests (especially those in FIPS 104-2) with decent reliability, without some amount of conditioning between the actual TRNG source and the test point, especially if you account for process and temperature variation (on the field you will often get failures at a rate MUCH higher than predicted for a perfect RNG). This can be fixed e.g. with a LFSR inserted after the TRNG, but then a breakdown of the TRNG source will typically NOT be caught by the prescribed tests!
- It was realized that mandating these test " when the module is powered up " (as required at least for level 4) is impractical in some unattended applications, culminating with Smart Cards (which admittedly do not aim level 4), where:
- There can't be an operator to reset a "RNG test failed" condition.
- There can be hundreds of devices (millions for Smart Cards), implying an unacceptable number of field failures in combination with 1 and false-positives in the mandated tests.
- In addition, a Smart Card can be accidentally powered up several times per second in the normal (or at least practically unavoidable) operation of the device; I've witnessed applications powering off/on any unrecognized contact Smart Card like there's no tomorrow, and that will also occur when a contactless Smart Card is left in front of some perfectly reasonable ISO/IEC 14443 or NFC readers. So it would have been needed some creative redefinition of " powered up " implying intend to use rather than mere establishment of operating power.
- We want to be ready fast after power-up.
Thus if you made something per the letter of FIPS 140-1 or FIPS 140-2 before Change Notice 2, it was bound to sometime report failure (and stop functioning save for a sometime impractical human action) even if it worked fine; and this sorry state of things was not a good insurance that it would stop working if the most probable and dangerous cause of field failure occurred (TRNG source stuck, almost stuck, or otherwise non-operative, like synchronized to power-supply ripple). And attempts to reduce the rate of false positives to the bare possible minimum would tend to seriously worsen the risk of letting a dangerously defective device run.
Q2: Are the changes an improvement?
The removal of the prescribed test is a great improvement. Now, competent implementors are at least able to make something that reliably operates when not defective, and reliably stops operating when it becomes defective. And the incentive to add conditioning (like a LFSR) that allows to pass certification at the expense of actual field security is gone. Previously, with some perfectly sound TRNG sources (like with a bias of a few percents, which is fine when followed by a CSPRNG), what was prescribed could not be the main defense against likely defects of the TRNG source. All modern methodology for RNG certification, like AIS31, recognize the need for some access to the TRNG source before conditioning, or/and a model of the source, and adapting the tests to that (including making more comprehensive tests when a first one failed).
Changes in test limits made from FIPS 140-1 to FIPS 140-2 with Change Notice 1 make each of the tests significantly dramatically more stringent (and thus much more impractical when used to test an unconditioned TRNG, and generating more false positives even for a conditioned one or a CSPRNG). I think I remember reading or hearing (sorry for the imprecision of that uncertain non-reference) that at least some of these changes are also related to the fact that the tests are not independent (thus it matters to the false positive rate if the 20000 bits in the 4 tests are from the same or different runs, the later significantly increasing the false-positive rate). The changes in the acceptance level in the runs test made in FIPS 140-2 Change Notice 1 (from FIPS 140-2 before that) is documented (page 54) to be a " correction ", that seems credible. Notice that the question gives, for the runs test of FIPS 140-2, a table of the erroneous bounds of FIPS 140-2 without Change Notice 1.
Update: As pointed by poncho in a comment, the increase in false positive rate from FIPS 140-1 to FIPS 140-2 (CN1) is dramatic, more than a hundredfold in the monobit test assuming a perfect source:$$1-\sum_{i=9,655}^{10,345}{20,000\choose i}/2^{20,000}\approx1/974,603\text{ for FIPS 140-1}$$ $$1-\sum_{i=9,726}^{10,274}{20,000\choose i}/2^{20,000}\approx1/9,662\text{ for FIPS 140-2}$$
What's worse, if one defines a good source as one that is less biased than some threshold (a reasonable requirement for a physical TRNG), the false positive rate can go from rare for FIPS 140-1 bounds to totally disrupting for FIPS 140-2 bounds; that probably eased making the right decision and removing the tests altogether.
Q3: Are bounds for the run test inclusive?
Perhaps that could be determined by computing the odds of failure with and without the limits of the intervals given for a true random source, and seeing if some some round number emerges.
But why care? Statistical tests of the output a conditioned RNG, including any CSPRNG, is pointless; and has not been indispensable to get rubber-stamped since late 2002. And while the statistical test of an unconditioned TRNG source are necessary (and the tests in FIPS 140-1&2 rather sound), the acceptance levels of FIPS 140-1, and much more FIPS 140-2, are typically too harsh unless there is some backup strategy (like redoing a more complete test; notice that redoing the same test drastically alter the meaning of its original acceptance level).