My estimate of the entropy after $i$ iterations is roughly $128- \lg i$ bits (as $i$ grows large). I don't have a proof of this, but I'll lay out my rough back-of-the-envelope calculations below.
Here is the general problem:
Problem 1. Let $F:\{0,1\}^n \to \{0,1\}^n$ be a random, i.e., chosen uniformly at random from the set of all functions with that signature. Let $F^i$ denote the result of iterating $F$ $i$ times. Let $X$ be uniformly distributed on $\{0,1\}^n$. Let $F$ be known to the adversary, and $X$ be secret. What is the entropy of $F^i(X)$?
I don't know how to solve that problem. But here is a related problem that I do know how to solve.
Problem 2. Let $F$ be as above. Let $f_i$ denote the fraction of $n$-bit values that can appear at the output of $F^i$. In other words, $f_i = |S_i|/2^n$, where we define $S_i$ to be the the set $S_i = \{F^i(x) : x\in \{0,1\}^n\}$ of all values that can appear as the output of $F$ iterated $i$ times. What is the value of $f_i$, as a function of $i$?
Note that the answer to the problem 2 gives us a heuristic rough estimate at the answer to problem 1. In particular, if we assume that $F^i(X)$ is approximately uniformly distributed on the set of all possible values (i.e., on $S_i$), then the entropy of $F^i(X)$ will be approximately $n - \lg f_i$.
And I can give you a reasonable solution to problem 2. In particular, using a crude heuristic, $f_i$ approximately satisfies the following recurrence relation:
$$f_{i+1} \approx 1 - e^{-f_i},$$
where $f_0 = 1$. The first few values of $f_i$ are $f_1=0.632$, $f_2=0.469$, $f_3=0.374$, $f_4=0.312$, $f_5=0.268$, $f_6=0.235$, $f_7=0.210$. This recurrence relation does break down when $i$ gets extremely large, certainly by the time $i$ reaches $2^{n/2}$ or so, but this might not be a major concern for the values of $i$ you care about in practice.
Asymptotically, when $i$ gets large enough (but not so large that it gets close to $2^{n/2}$), I think that a crude approximation to $f_i$ is
$$f_i \sim 2/i.$$
Thus, for large (but not too large) $i$, this gives us a crude estimate for the entropy of $F^i(X)$ as
$$n-\lg f_i \approx n+1-\lg(i).$$
Plugging in $n=128$ in your particular problem, we get $129-\lg(i)$ as an estimate of the entropy after $i$ iterations. This is within $\pm 1$ bit of my estimate at the top of the answer.
Incidentally, I have in my notes that a better approximation is $f_i \sim 2/(i+\log(i))$, but I don't know where I got this from, so it might be faulty. If that approximation is accurate, then a better estimate of the entropy of $F^i(X)$ is $n+1-\lg(i+\log(i))$.
Again, as a reminder, all of these estimates are only intended to be used when $i$ gets large (but not crazy large). When $i$ is small, you can calculate $f_i$ directly using the recurrence relation above. And all of these estimates are just estimates, that rely upon several approximations, which may be pretty crude.
My thanks to @fgrieu for helpful comments on this answer.